Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Publicly available strand-specific RNA-Seq data for MAQC samples?

    Hi,

    Is there publicly available strand-specific RNA-Seq data for the MAQC samples?

    It seems that there are people who have done this (http://www.nugeninc.com/nugen/index....brary-systems/), but I don't know if there are publicly available data that I can download.

    Thanks!

  • #2
    Strand-specific RNA-Seq data

    As you indicate in the link to the NuGEN product web page we have generated strand-specific RNA-Seq data using our Encore Complete RNA-Seq Library System. We do make this data available upon request, so please contact me if you are interested in receipt of this data.

    Regards,
    Steve Kain
    [email protected]

    Comment


    • #3
      Hi Steve,

      I'm more interested in using paired-end reads of the samples, do you have them available, too?

      Thanks!

      Comment


      • #4
        I believe Illumina's Human Body Map data is stranded. Have you tried searching NCBI's SRA?

        Comment


        • #5
          Hi golharam,

          I'm currently working on a method for RNA-Seq data analysis, so I'd like to use the MAQC samples where I can verify my method easily with qRT-PCR or microarray data.

          Comment

          Latest Articles

          Collapse

          • seqadmin
            Latest Developments in Precision Medicine
            by seqadmin



            Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

            Somatic Genomics
            “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
            Yesterday, 01:16 PM
          • seqadmin
            Recent Advances in Sequencing Analysis Tools
            by seqadmin


            The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
            05-06-2024, 07:48 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, Yesterday, 07:15 AM
          0 responses
          13 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 05-23-2024, 10:28 AM
          0 responses
          17 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 05-23-2024, 07:35 AM
          0 responses
          20 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 05-22-2024, 02:06 PM
          0 responses
          10 views
          0 likes
          Last Post seqadmin  
          Working...
          X