Publicly available strand-specific RNA-Seq data for MAQC samples?

[tmy1018]

Hi,

Is there publicly available strand-specific RNA-Seq data for the MAQC samples?

It seems that there are people who have done this (http://www.nugeninc.com/nugen/index....brary-systems/), but I don't know if there are publicly available data that I can download.

Thanks!

[NuGEN]

Strand-specific RNA-Seq data

As you indicate in the link to the NuGEN product web page we have generated strand-specific RNA-Seq data using our Encore Complete RNA-Seq Library System. We do make this data available upon request, so please contact me if you are interested in receipt of this data.

Regards,
Steve Kain
[email protected]

[tmy1018]

Hi Steve,

I'm more interested in using paired-end reads of the samples, do you have them available, too?

Thanks!

[golharam]

I believe Illumina's Human Body Map data is stranded. Have you tried searching NCBI's SRA?

[tmy1018]

Hi golharam,

I'm currently working on a method for RNA-Seq data analysis, so I'd like to use the MAQC samples where I can verify my method easily with qRT-PCR or microarray data.