Hi
I am using mpileup on 296 sequenced genomes. Obviously this takes quite a long time, but I was wondering if anyone knows a way of making it faster, like using multi thread. This is my command:
Thanks
I am using mpileup on 296 sequenced genomes. Obviously this takes quite a long time, but I was wondering if anyone knows a way of making it faster, like using multi thread. This is my command:
Code:
samtools mpileup -ugf ref.fas *.bam | /usr/local/samtools/bcftools/bcftools view -vcg - > my.vcf
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