Originally posted by ashuchawla
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If you have gff file and genome file, then you can extract fasta format sequences in many ways. here i know using Cufflinks source.
gffread -E annotation.gff -o- | more
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1. embl/gbk to FASTA conversion; 2. 16s RNA to be found in a embl/gbk file
I need help with 2 things:
1. I have a EMBL or a gbk file format for the contigs of Salmonella enterica and I want to find the contig that has 16sRNA gene. Could anybody help me with this please?
2. How can I convert EMBL/gbk to FASTA format?Tags: None
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