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We are pleased to announce the release of VCF version dbSNP build 132, available on the mouse assembly (UCSC/mm9). dbSNP build 132 is available at NCBI.
This dbSNP_132 VCF version can be used to GATK pipeline.
Many thanks to dbSNP at NCBI for the data.
Many thanks to dbSNP at NCBI for the data. This version were produced at WuXi Genome Center by Qin Luo.
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mm9_karyosort =['chrM','chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chrX', 'chrY','chr1_random','chr3_random','chr4_random','chr5_random','chr7_random','chr8_random','chr9_random','chr13_random','chr16_random','chr17_random','chrX_random','chrY_random','chrUn_random',]
This dbSNP_132 VCF version can be used to GATK pipeline.
Many thanks to dbSNP at NCBI for the data.
Many thanks to dbSNP at NCBI for the data. This version were produced at WuXi Genome Center by Qin Luo.
downloader
mm9_karyosort =['chrM','chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chrX', 'chrY','chr1_random','chr3_random','chr4_random','chr5_random','chr7_random','chr8_random','chr9_random','chr13_random','chr16_random','chr17_random','chrX_random','chrY_random','chrUn_random',]