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  • Download UCSC table with mySql workbench

    Does anyone know how to download tables from ucsc server with mysql workbench?
    Thanks in advance

  • #2
    Hello,

    I am working with JAVA api for KEGG database. I am having problem using the method get_pathways_by_genes method as given in the KEGG manual. Has anybody used it?! I am unable to retrieve pathway information from a list of genes.

    Comment


    • #3
      This link provides info about how to log in to the public instance of MySQL at UCSC: http://genome.ucsc.edu/FAQ/FAQdownloads.html#download29

      Originally posted by desmo View Post
      Does anyone know how to download tables from ucsc server with mysql workbench?
      Thanks in advance

      Comment


      • #4
        You should post this as a separate message since this is not related the parent question.

        Originally posted by Anandhi View Post
        Hello,

        I am working with JAVA api for KEGG database. I am having problem using the method get_pathways_by_genes method as given in the KEGG manual. Has anybody used it?! I am unable to retrieve pathway information from a list of genes.

        Comment


        • #5
          Thanks. I got it!

          Comment

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