I am trying to get CASAVA setup on my fancy computer but I am having trouble verifying that the code is muddleheaded. Specifically my test files run, but I cannot see the threading for my single lane example. See http://www.biostars.org/post/show/46...hreaded/#46477
On my 32 core machine I see 3% cpu utilization (1/32 threads).
I have been exploring the source with artistically placed "grep" commands and I cannot find where the threading occurs.
1. Is this step parallel?
2. Where is the CPP associated with the process called "demultiplexBcls"
On my 32 core machine I see 3% cpu utilization (1/32 threads).
I have been exploring the source with artistically placed "grep" commands and I cannot find where the threading occurs.
1. Is this step parallel?
2. Where is the CPP associated with the process called "demultiplexBcls"
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