Hi, I have a vcf for variants from a patient, and wish to compare the genotype calls against 1000 genome genotypes. So basically given a varnat whose genotype in the patient is AA, and I wish to ask among 1000 genome data, how many individuals bearing the same genotype. It would be best to list all the genotypes that are absent in the 1000 genome data.
Do you know any software can achieve this comparison?
Thank you very much.
Do you know any software can achieve this comparison?
Thank you very much.
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