Hi,
I have SAM/BAM files of paired end Illumina sequencing obtained by BWA.
I want to filter out all reads having "proper pair" and both the reads of pair aligned to references. How can I filter them?
Thanks in advance...
I have SAM/BAM files of paired end Illumina sequencing obtained by BWA.
I want to filter out all reads having "proper pair" and both the reads of pair aligned to references. How can I filter them?
Thanks in advance...
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