Dear all,
Is there any possibility to filter bam files by indexes?
I've create in R a txt file with needed sequences indexes and now I have to extract these sequences and rewrite it as a new bam file.
Does anybody know if this is possible? Preferably in R or samtools.
If these is not possible, is there any way to create pileup file with Rsamtools simmilar to samtools mpileup?
Thanks for any response
Is there any possibility to filter bam files by indexes?
I've create in R a txt file with needed sequences indexes and now I have to extract these sequences and rewrite it as a new bam file.
Does anybody know if this is possible? Preferably in R or samtools.
If these is not possible, is there any way to create pileup file with Rsamtools simmilar to samtools mpileup?
Thanks for any response
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