Hi all,
Would anyone suggest the criteria to choose ideal GATK and samtools filtering paramters for SNP and Indels(whole exome-sequencing). Is there any particular approach to choose the paramters?
Any suggestions would be highly appreciated!!!
Thanks in advance.
Would anyone suggest the criteria to choose ideal GATK and samtools filtering paramters for SNP and Indels(whole exome-sequencing). Is there any particular approach to choose the paramters?
Any suggestions would be highly appreciated!!!
Thanks in advance.
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