Hello
I try to detect transcription start site in a bacterial species. We enriched the 5' ends of the transcripts and sequenced them. Now I would like to deduce the TSS from that data.
Can anybody give me a hint what software is best suitable?
I found a lot about Chip-seq peak calling, although I'm not very familiar with Chip-seq, I think this is something a bit different.
All paper I checked (meanwhile this is done a lot) seems to do that manually but I really think there should be a better way.
thank you very much in advance.
I try to detect transcription start site in a bacterial species. We enriched the 5' ends of the transcripts and sequenced them. Now I would like to deduce the TSS from that data.
Can anybody give me a hint what software is best suitable?
I found a lot about Chip-seq peak calling, although I'm not very familiar with Chip-seq, I think this is something a bit different.
All paper I checked (meanwhile this is done a lot) seems to do that manually but I really think there should be a better way.
thank you very much in advance.
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