Hi,
I mapped paired end reads with Bowtie2 to produce a SAM file. Any reason why the following happens???
I run the following commands:
samtools view -bS myfile.sam > myfile.bam
samtools sort myfile.bam myfile.sorted
I get the following output:
[samopen] SAM header is present: 25 sequences.
[bam_sort_core] merging from 87 files...
[bam_header_read] EOF marker is absent. The input is probably truncated.
[bam_header_read] bgzf_check_EOF: Invalid argument
[bam_header_read] invalid BAM binary header (this is not a BAM file).
Segmentation fault
Thanks!
I mapped paired end reads with Bowtie2 to produce a SAM file. Any reason why the following happens???
I run the following commands:
samtools view -bS myfile.sam > myfile.bam
samtools sort myfile.bam myfile.sorted
I get the following output:
[samopen] SAM header is present: 25 sequences.
[bam_sort_core] merging from 87 files...
[bam_header_read] EOF marker is absent. The input is probably truncated.
[bam_header_read] bgzf_check_EOF: Invalid argument
[bam_header_read] invalid BAM binary header (this is not a BAM file).
Segmentation fault
Thanks!
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