Hi all,
I am generating a VCF file and then running the Variant Effect Predictor (VEF) tool on it. This is in return giving me a new text file with the a list of variants and its potential effects. In one of the columns is the effect such as intronic change, exonic etc.
I wanted to get a line count for the total number of lines which have say for e.e exonic in a certain coulmn of the text file. Ideally, i would like to have a list of all variations and the number of lines for e.g.
Exonic = 200
Intronic = 600
...
...
If that's too complicated then i could simply have a single entity and run it multiple times.
Thanks in advance.
A
I am generating a VCF file and then running the Variant Effect Predictor (VEF) tool on it. This is in return giving me a new text file with the a list of variants and its potential effects. In one of the columns is the effect such as intronic change, exonic etc.
I wanted to get a line count for the total number of lines which have say for e.e exonic in a certain coulmn of the text file. Ideally, i would like to have a list of all variations and the number of lines for e.g.
Exonic = 200
Intronic = 600
...
...
If that's too complicated then i could simply have a single entity and run it multiple times.
Thanks in advance.
A
Comment