Hi,
I want to map sequence reads into a reference gene. However, it's possible to have a higher number of SNPs and few insertions and/or deletions for this gene in the genome that I'm analyzing. May I please know which mapping software is suitable for this purpose and whether its useful to allow many mismatches?
Your advise is highly appreciated.
Poni
I want to map sequence reads into a reference gene. However, it's possible to have a higher number of SNPs and few insertions and/or deletions for this gene in the genome that I'm analyzing. May I please know which mapping software is suitable for this purpose and whether its useful to allow many mismatches?
Your advise is highly appreciated.
Poni
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