Hi all,
I would like to know if anybody has experience using VarScan2 to call copynumber (assuming we have Tumor/Normal matched sample). Specifically, I want to know how you calculate the parameter "data ratio".
Any suggestion will be appreciated.
I would like to know if anybody has experience using VarScan2 to call copynumber (assuming we have Tumor/Normal matched sample). Specifically, I want to know how you calculate the parameter "data ratio".
Any suggestion will be appreciated.
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