Hello everyone,
I'm using the command line version of Blast2GO and I was hoping that someone could help me with the output format.
In the GUI version of Blast2GO you can get your output in a number of different formats (Genespring, etc.), but b2g4pipe seems to output the .annot format exclusively.
Now I know I can just open my output file in the GUI version and save it in another format, but if I have hundreds of small annotations that I need in Genespring format so that method would be a bit of a pain. So my questions are:
1) Is there a way to get b2g4pipe to output Genespring format annotations (I'm told that there isn't in the current version but I'd be happy to discover this was wrong)?
2) Assuming there isn't, does anyone know of a command line script to convert .annot format to Genespring format?
Thanks so much for your help
I'm using the command line version of Blast2GO and I was hoping that someone could help me with the output format.
In the GUI version of Blast2GO you can get your output in a number of different formats (Genespring, etc.), but b2g4pipe seems to output the .annot format exclusively.
Now I know I can just open my output file in the GUI version and save it in another format, but if I have hundreds of small annotations that I need in Genespring format so that method would be a bit of a pain. So my questions are:
1) Is there a way to get b2g4pipe to output Genespring format annotations (I'm told that there isn't in the current version but I'd be happy to discover this was wrong)?
2) Assuming there isn't, does anyone know of a command line script to convert .annot format to Genespring format?
Thanks so much for your help
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