Hi guys,
I'm quite new to the field and trying to find my way around all available resources is a challenge so I'm asking for some advice here.
I've preformed ChIP-seq for a transcription factor (thus expecting "narrow" peaks) in biological triplicates complete with input controls.
To analyze my data I would like a peak caller that can make use of the biological replicates, is there one out there?
I know I can run each replicate separate and overlap common peaks but if there is software that can make use of the replicates and turn it into statistics I'd prefer that option.
Best regards,
Anna
I'm quite new to the field and trying to find my way around all available resources is a challenge so I'm asking for some advice here.
I've preformed ChIP-seq for a transcription factor (thus expecting "narrow" peaks) in biological triplicates complete with input controls.
To analyze my data I would like a peak caller that can make use of the biological replicates, is there one out there?
I know I can run each replicate separate and overlap common peaks but if there is software that can make use of the replicates and turn it into statistics I'd prefer that option.
Best regards,
Anna
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