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  • problems with downloading files using fasp protocol

    Hi all,

    I want to use some archival sequence data. I am learning how to use .sra files by following the SRAdb documentation, but I have some problems with downloading .lite.sra files from NCBI ftp site using the fasp protocol as described on page 9 in the SRAdb document. I used the following code in Macintosh Lion.

    ascpCMD<-"'/Applications/Aspera Connect.app/Contents/Resources/ascp' -QT -l 300m -i '/Applications/Aspera Connect.app/Contents/Resources/asperaweb_id_dsa.putty'"
    sraFiles<-ascpSRA(in_acc = c("SRX000122"),sra_con, ascpCMD, fileType = 'litesra', destDir=getwd())

    sraFiles <- ascpSRA( in_acc = c("SRX000122"),sra_con, ascpCMD, fileType = 'litesra', destDir=getwd())

    I got the following errors:
    Session Stop (Error: Server aborted session: No such file or directory)

    Session Stop (Error: Server aborted session: No such file or directory)

    Session Stop (Error: Server aborted session: No such file or directory)

    Session Stop (Error: Server aborted session: No such file or directory)

    Session Stop (Error: Server aborted session: No such file or directory)

    Session Stop (Error: Server aborted session: No such file or directory)

    Does anybody know what happens? Thank you in advance!

  • #2
    Are you behind a firewall? This could be an issue of the firewall blocking fasp traffic.

    Comment


    • #3
      Thanks GenoMax. No, my firewall was disabled. Any other thoughts? Thanks!

      Comment

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