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You can use certain spicy whom genome as reference. Those RNA-seq mapped back to the region other than protein coding RNA also can plus the rRNA and tRNA annotation to give higher output -
Hi,
I am trying to predicate LncRNA from aPlant species. I have sequenced total RNA and then proceed to do the de novo assembly to get the transcriptome. Any idea about how to predicate the LncRNA target without reference genome?
searching for the CPC software and phyloCSF but how can perform them from the basic I don't really know? Thank you so much!Leave a comment:
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miRNA target package/program
Hi,
I was able to obtain a list of miRNAs from my RNA-seq data, but now I would like to analyze potential targets.
Is there any software or bioconductor's package that allows me to identify potential targets?
Thanks in advance!
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This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.
The Headliner
The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...03-03-2025, 01:39 PM -
The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...02-24-2025, 06:31 AM
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