Hi,
Anyone have used htseq-count and bedtools multicov, I use both them to get the read counts for ref genes. But I got very different read counts between them. Which one is more common..
bedtools htseq-count
uc001aaa.3 8 0
uc001aac.4 2309 0
uc001aae.4 753 0
uc001aah.4 2309 0
uc001aai.1 586 0
uc001aak.3 0 0
uc001aal.1 0 0
uc001aam.4 1315 6
Anyone have used htseq-count and bedtools multicov, I use both them to get the read counts for ref genes. But I got very different read counts between them. Which one is more common..
bedtools htseq-count
uc001aaa.3 8 0
uc001aac.4 2309 0
uc001aae.4 753 0
uc001aah.4 2309 0
uc001aai.1 586 0
uc001aak.3 0 0
uc001aal.1 0 0
uc001aam.4 1315 6
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