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  • tahamasoodi
    Success
    • May 2012
    • 130

    #1

    Copy number variation from whole genome data

    I have the BAM files of whole genome sequencing data. I want to know the copy number variations from the coding part (exome) of the genome. Is there any tool which can predict the CNVs from the coding part of the genome only?
    Thanks,
  • tahamasoodi
    Success
    • May 2012
    • 130

    #2
    Can anybody help?
    Thanks,

    Comment

    • aaronh
      Member
      • Sep 2008
      • 46

      #3
      Take your pick of some CNV callers and then intersect those calls with gene regions with bedtools.

      Comment

      • pratima
        Junior Member
        • May 2014
        • 2

        #4
        how do i use galaxy

        Comment

        • dpryan
          Devon Ryan
          • Jul 2011
          • 3478

          #5
          Originally posted by pratima View Post
          how do i use galaxy
          Normally with a computer.

          Comment

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