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  • Copy number variation from whole genome data

    I have the BAM files of whole genome sequencing data. I want to know the copy number variations from the coding part (exome) of the genome. Is there any tool which can predict the CNVs from the coding part of the genome only?
    Thanks,

  • #2
    Can anybody help?
    Thanks,

    Comment


    • #3
      Take your pick of some CNV callers and then intersect those calls with gene regions with bedtools.

      Comment


      • #4
        how do i use galaxy

        Comment


        • #5
          Originally posted by pratima View Post
          how do i use galaxy
          Normally with a computer.

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