glimmer3 output

jjk

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Join Date: Nov 2009

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glimmer3 output

11-15-2012, 11:37 PM

Currently I am setting up DIYA and I experienced some small problems with glimmer. I managed to install tigr-glimmer on ubuntu 12.10. Currently using g3-from-scratch.diya.csh to find ORF and now I am planning to identify them.

The question is, as I end up with a bunch of files I assume that I need *.detail or *.predict. Is there a way that glimmer can export the fasta input file as something like a genbank file? That I can run analysis applications on the gbk?

Maybe it is just to early...

tigr-glimmer extract 007/007.fasta.convert 007/008.predict

Creates a nice mFASTA file

Last edited by jjk; 11-16-2012, 12:01 AM.
Tags: diya, glimmer

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