mrsFast installation

[frymor]

Hi all,

I am trying to run the mrsFast tool with no success.
I would like to use the tool SPLITREAD and they strongly recommend to use mrsFast for the pre-mapping steps.

My problem is, that everything seems fine. I download the tool, unzip it and run make with out any problems.

But than when I try to start it, I get a strange error, I can't start with.

this is what I get:

USER:~/software$ unzip mrsfast-2.4.0.4.zip 
Archive:  mrsfast-2.4.0.4.zip
  creating: mrsfast-2.4.0.4/
 inflating: mrsfast-2.4.0.4/HashTable.c  
 inflating: mrsfast-2.4.0.4/Common.c  
 inflating: mrsfast-2.4.0.4/RefGenome.c  
 inflating: mrsfast-2.4.0.4/HashTable.h  
 inflating: mrsfast-2.4.0.4/Makefile  
 inflating: mrsfast-2.4.0.4/MrsFAST.h  
 inflating: mrsfast-2.4.0.4/Changelog  
 inflating: mrsfast-2.4.0.4/Reads.h  
 inflating: mrsfast-2.4.0.4/Reads.c  
 inflating: mrsfast-2.4.0.4/baseFAST.c  
 inflating: mrsfast-2.4.0.4/CommandLineParser.h  
 inflating: mrsfast-2.4.0.4/RefGenome.h  
 inflating: mrsfast-2.4.0.4/CommandLineParser.c  
 inflating: mrsfast-2.4.0.4/Output.h  
 inflating: mrsfast-2.4.0.4/Common.h  
 inflating: mrsfast-2.4.0.4/MrsFAST.c  
 inflating: mrsfast-2.4.0.4/Output.c  
USER:~/software$ cd mrsfast-2.4.0.4/ 
USER:~/software/mrsfast-2.4.0.4$ ll
total 152
drwxr-xr-x  2 AYeroslaviz AYeroslaviz  4096 2012-08-18 19:37 ./
drwxr-xr-x 56 AYeroslaviz AYeroslaviz  4096 2012-11-16 16:54 ../
-rw-r--r--  1 USER USER 10805 2012-08-18 19:22 baseFAST.c
-rw-r--r--  1 USER USER  1825 2012-08-18 19:30 Changelog
-rw-r--r--  1 USER USER 11857 2012-08-18 19:22 CommandLineParser.c
-rw-r--r--  1 USER USER  1815 2012-08-18 19:22 CommandLineParser.h
-rw-r--r--  1 USER USER  4099 2012-08-18 19:22 Common.c
-rw-r--r--  1 USER USER  3689 2012-08-18 19:22 Common.h
-rw-r--r--  1 USER USER 11045 2012-08-18 19:22 HashTable.c
-rw-r--r--  1 USER USER  2265 2012-08-18 19:22 HashTable.h
-rw-r--r--  1 USER USER   205 2012-08-18 19:22 Makefile
-rw-r--r--  1 USER USER 37355 2012-08-18 19:25 MrsFAST.c
-rw-r--r--  1 USER USER  2682 2012-08-18 19:22 MrsFAST.h
-rw-r--r--  1 USER USER  4440 2012-08-18 19:22 Output.c
-rw-r--r--  1 USER USER  2232 2012-08-18 19:22 Output.h
-rw-r--r--  1 USER USER 11004 2012-08-18 19:22 Reads.c
-rw-r--r--  1 USER USER  2085 2012-08-18 19:22 Reads.h
-rw-r--r--  1 USER USER  3791 2012-08-18 19:22 RefGenome.c
-rw-r--r--  1 USER USER  1892 2012-08-18 19:22 RefGenome.h
USER:~/software/mrsfast-2.4.0.4$ make
cc -O2 -s    -c -o baseFAST.o baseFAST.c
cc -O2 -s    -c -o MrsFAST.o MrsFAST.c
cc -O2 -s    -c -o Common.o Common.c
cc -O2 -s    -c -o CommandLineParser.o CommandLineParser.c
cc -O2 -s    -c -o RefGenome.o RefGenome.c
cc -O2 -s    -c -o HashTable.o HashTable.c
cc -O2 -s    -c -o Reads.o Reads.c
cc -O2 -s    -c -o Output.o Output.c
gcc baseFAST.o MrsFAST.o Common.o CommandLineParser.o RefGenome.o HashTable.o Reads.o Output.o -o mrsfast -s -static -lz -lm
rm *.o
USER:~/software/mrsfast-2.4.0.4$ mrsfast 
unexpected reloc type in static binarySegmentation fault

What am I doing wrong.

I have Ubuntu 10.04.4 LTS


Thanks for the help

cu,
Assa

[frymor]

Does anyone use mrsFast nowaday?

or READSPLIT?