Hi all,
I am trying to run the mrsFast tool with no success.
I would like to use the tool SPLITREAD and they strongly recommend to use mrsFast for the pre-mapping steps.
My problem is, that everything seems fine. I download the tool, unzip it and run make with out any problems.
But than when I try to start it, I get a strange error, I can't start with.
this is what I get:
What am I doing wrong.
I have Ubuntu 10.04.4 LTS
Thanks for the help
cu,
Assa
I am trying to run the mrsFast tool with no success.
I would like to use the tool SPLITREAD and they strongly recommend to use mrsFast for the pre-mapping steps.
My problem is, that everything seems fine. I download the tool, unzip it and run make with out any problems.
But than when I try to start it, I get a strange error, I can't start with.
this is what I get:
Code:
USER:~/software$ unzip mrsfast-2.4.0.4.zip Archive: mrsfast-2.4.0.4.zip creating: mrsfast-2.4.0.4/ inflating: mrsfast-2.4.0.4/HashTable.c inflating: mrsfast-2.4.0.4/Common.c inflating: mrsfast-2.4.0.4/RefGenome.c inflating: mrsfast-2.4.0.4/HashTable.h inflating: mrsfast-2.4.0.4/Makefile inflating: mrsfast-2.4.0.4/MrsFAST.h inflating: mrsfast-2.4.0.4/Changelog inflating: mrsfast-2.4.0.4/Reads.h inflating: mrsfast-2.4.0.4/Reads.c inflating: mrsfast-2.4.0.4/baseFAST.c inflating: mrsfast-2.4.0.4/CommandLineParser.h inflating: mrsfast-2.4.0.4/RefGenome.h inflating: mrsfast-2.4.0.4/CommandLineParser.c inflating: mrsfast-2.4.0.4/Output.h inflating: mrsfast-2.4.0.4/Common.h inflating: mrsfast-2.4.0.4/MrsFAST.c inflating: mrsfast-2.4.0.4/Output.c USER:~/software$ cd mrsfast-2.4.0.4/ USER:~/software/mrsfast-2.4.0.4$ ll total 152 drwxr-xr-x 2 AYeroslaviz AYeroslaviz 4096 2012-08-18 19:37 ./ drwxr-xr-x 56 AYeroslaviz AYeroslaviz 4096 2012-11-16 16:54 ../ -rw-r--r-- 1 USER USER 10805 2012-08-18 19:22 baseFAST.c -rw-r--r-- 1 USER USER 1825 2012-08-18 19:30 Changelog -rw-r--r-- 1 USER USER 11857 2012-08-18 19:22 CommandLineParser.c -rw-r--r-- 1 USER USER 1815 2012-08-18 19:22 CommandLineParser.h -rw-r--r-- 1 USER USER 4099 2012-08-18 19:22 Common.c -rw-r--r-- 1 USER USER 3689 2012-08-18 19:22 Common.h -rw-r--r-- 1 USER USER 11045 2012-08-18 19:22 HashTable.c -rw-r--r-- 1 USER USER 2265 2012-08-18 19:22 HashTable.h -rw-r--r-- 1 USER USER 205 2012-08-18 19:22 Makefile -rw-r--r-- 1 USER USER 37355 2012-08-18 19:25 MrsFAST.c -rw-r--r-- 1 USER USER 2682 2012-08-18 19:22 MrsFAST.h -rw-r--r-- 1 USER USER 4440 2012-08-18 19:22 Output.c -rw-r--r-- 1 USER USER 2232 2012-08-18 19:22 Output.h -rw-r--r-- 1 USER USER 11004 2012-08-18 19:22 Reads.c -rw-r--r-- 1 USER USER 2085 2012-08-18 19:22 Reads.h -rw-r--r-- 1 USER USER 3791 2012-08-18 19:22 RefGenome.c -rw-r--r-- 1 USER USER 1892 2012-08-18 19:22 RefGenome.h USER:~/software/mrsfast-2.4.0.4$ make cc -O2 -s -c -o baseFAST.o baseFAST.c cc -O2 -s -c -o MrsFAST.o MrsFAST.c cc -O2 -s -c -o Common.o Common.c cc -O2 -s -c -o CommandLineParser.o CommandLineParser.c cc -O2 -s -c -o RefGenome.o RefGenome.c cc -O2 -s -c -o HashTable.o HashTable.c cc -O2 -s -c -o Reads.o Reads.c cc -O2 -s -c -o Output.o Output.c gcc baseFAST.o MrsFAST.o Common.o CommandLineParser.o RefGenome.o HashTable.o Reads.o Output.o -o mrsfast -s -static -lz -lm rm *.o USER:~/software/mrsfast-2.4.0.4$ mrsfast unexpected reloc type in static binarySegmentation fault
I have Ubuntu 10.04.4 LTS
Thanks for the help
cu,
Assa
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