ChIPBase: transcription factor binding maps, lncRNAs, miRNAs, mRNAs, ncRNAs, ChIP-Seq

[yjhua2110]

Dear All,

Here, we introduce an integrated resource and platform, ChIPBase, for decoding transcription factor binding sites and the transcriptional regulation of long non-coding RNAs (lncRNAs, lincRNAs), microRNAs, other ncRNAs (snoRNAs, tRNAs, snRNAs, etc.) and protein-coding genes from ChIP-Seq data. ChIPBase provides several web-based tools and browsers to explore TF-lncRNA, TF-miRNA, TF-mRNA, TF-ncRNA and TF-miRNA-mRNA regulatory networks and their expression profiles.

Please visit http://deepbase.sysu.edu.cn/chipbase/ or read our ChIPBase paper (Nucleic Acids Res. doi:10.1093/nar/gks1060, 2013, First published online: November 17, 2012.) for details.

This is the first version of ChIPBase database. We look forward to your feedback.

Thanks!