Slowness of Bioperl with GFF3 database access

[angeloulivieri]

Hi all,
I have a big problem with using GFF3 database with BioPerl. This is not a question about what is the way to write some bioperl code. I'm experiencing that when I have to do a lot of accessess on a GFF database (with Bio:B::SeqFeature::Store) the slowness increase until my script can stay running for more than a day.

How can I solve it? Or it cannot be done?

Thanks a lot!

[maubp]

Have you considered writing an email to the BioPerl mailing list? That would probably work better than posting here.

See http://lists.open-bio.org/mailman/listinfo/bioperl-l

[angeloulivieri]

No, not considered yet! I'll do it! Thanks...