I am not sure how to look at this information. I have an diff. isoform output from cufflinks. the first column is ensembl transcript ID, second column is ensembl gene ID and so forth.
what I expect to see is that there would be several different transcript IDs sharing the same gene IDs. But it didn't seem to be the case. I understand not alll isoforms come from the same gene's alternative splicing, but most would be.
so how to look at this diff isoform output?
what I expect to see is that there would be several different transcript IDs sharing the same gene IDs. But it didn't seem to be the case. I understand not alll isoforms come from the same gene's alternative splicing, but most would be.
so how to look at this diff isoform output?