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  • JQL
    Member
    • Apr 2011
    • 83
    #1

    differential isoforms

    I am not sure how to look at this information. I have an diff. isoform output from cufflinks. the first column is ensembl transcript ID, second column is ensembl gene ID and so forth.

    what I expect to see is that there would be several different transcript IDs sharing the same gene IDs. But it didn't seem to be the case. I understand not alll isoforms come from the same gene's alternative splicing, but most would be.

    so how to look at this diff isoform output?
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