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Hi,
I used BreakDancer and GASV for structural variation analysis of my data which comprises of around 12 exomes, but I'm facing difficulty in interpreting the results. First of all there are a lot of SVs which are not there in the BAM file. Second I tried to check if there are any common SVs among these 12 exomes but I could not find anyone. How can I check out false positives and how can I interpret these variants?
I used BreakDancer and GASV for structural variation analysis of my data which comprises of around 12 exomes, but I'm facing difficulty in interpreting the results. First of all there are a lot of SVs which are not there in the BAM file. Second I tried to check if there are any common SVs among these 12 exomes but I could not find anyone. How can I check out false positives and how can I interpret these variants?