Working on de novo assembly, but this particular problem is more about pre-filtering telomeric reads (the sequence of the repeat is known).
Any robust workflows to filter 150 nt MiSeq reads for telomeric reads? Or more abstractly, for filtering reads with a particular known kmer of varying repeat length, such as (NNNNN)X? Thanks.
Any robust workflows to filter 150 nt MiSeq reads for telomeric reads? Or more abstractly, for filtering reads with a particular known kmer of varying repeat length, such as (NNNNN)X? Thanks.
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