Recently I download the BED file from GEO, the authors used ChIP-Seq to find the ERa bing site genome-wide,but just supply the peak, the question is how to find the likely regulated target genes from these peaks?
here is the format:
when I load all these data in UCSC,there is a error happend,and puzzled me.
Could someone give me some clue convert these bing-sites to target genes?
I know some R language but no idea completely.
here is the website:ftp://ftp.ncbi.nih.gov/pub/geo/DATA/...2_peaks.bed.gz
thx!
here is the format:
Code:
track name=ER_E2 description=ER_E2 chr1 557112 558114 chr1 559459 560286 chr1 998864 999397 chr1 999399 999604 chr1 1004343 1005146 chr1 1070346 1071080 chr1 1305474 1306502 chr1 1358287 1358744 chr1 1776987 1777750 chr1 1820476 1821168 chr1 1922754 1923628 chr1 2131962 2132747 chr1 2325805 2326447 chr1 2368996 2369977 ....
Could someone give me some clue convert these bing-sites to target genes?
I know some R language but no idea completely.
here is the website:ftp://ftp.ncbi.nih.gov/pub/geo/DATA/...2_peaks.bed.gz
thx!
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