I am very interested on this discussion..
Can Pysamstats give me the difference between reds (forward or reverse)?
I need a table with these informations:
IGV give me something like this when I put the arrow of the mouse over a read but I need of a table...
Can Pysamstats give me the difference between reds (forward or reverse)?
I need a table with these informations:
Code:
Chr/position/reference_base/read_base (number or %(A,C,G,T) found in forward or reverse strand)/insertion/deletion Example: chr1 20 A A:30 C:20 G:0 T:0 a:0 c:0 g:0 t:0 Ins:0 del:0
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