I used cufflinks2.0.2, it has no problem to get results from cufflinks (parameter -u,-b -G)
But when I ran cuffdiff on the same option , it generate zero byte files of results. Really strange !!
all progressions are fine not thing come up as errors !!
But when I ran cuffdiff on the same option , it generate zero byte files of results. Really strange !!
all progressions are fine not thing come up as errors !!