Hello,
As I was advised here I tried blat instead of lst and I was really surprised. For example I checked a 1500 bp contig, and while blast found only very partial hit (about 300 bp), blat found a 99% hit to the whole contig. So.. shouldn't I trust blast? how this can be explained?
Thank you!!!!
As I was advised here I tried blat instead of lst and I was really surprised. For example I checked a 1500 bp contig, and while blast found only very partial hit (about 300 bp), blat found a 99% hit to the whole contig. So.. shouldn't I trust blast? how this can be explained?
Thank you!!!!
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