Hi all,
I am running the GATK depth of coverage tool on a whole genome sample. When I started the analysis, the progress meter showed this:
Should this really take 42 hours to run? Or am I misinterpreting the progress meter outputs? Can this be run in a multi-thread fashion, Or would a better approach be to break the file up into smaller pieces and run it by chromosomes, or some other fashion?
Thanks
I am running the GATK depth of coverage tool on a whole genome sample. When I started the analysis, the progress meter showed this:
INFO 08:08:14,491 ProgressMeter - 1:601688 5.90e+05 30.0 s 50.9 s 0.0% 42.9 h 42.9 h
Thanks
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