Novoalign update?
Hi Colin.
I have been working with Novoalign a bit and am finding it useful in picking up indels and SNPs missed by other aligners. I am wondering if it can also pick up structural aberrations that I have missed using other approaches. Is there an update on the timelines for the following features, mentioned in the documentation:
"novostruct Uses paired end alignments to identify locations where the individual being sequenced is structurally different to the
reference sequences. This could be inter sequence variations such as large insertions, deletions and inversions or inter sequence variations.
Jul'08
novoasm Using results from novoalign and novopair calls SNPs and short indels.
ACE format output is provided for viewing of alignments.
Aug '08
novodensity Read density analysis for copy number, expression level and, peak detection.
Aug '08"
?
Thanks,
Ryan
Hi Colin.
I have been working with Novoalign a bit and am finding it useful in picking up indels and SNPs missed by other aligners. I am wondering if it can also pick up structural aberrations that I have missed using other approaches. Is there an update on the timelines for the following features, mentioned in the documentation:
"novostruct Uses paired end alignments to identify locations where the individual being sequenced is structurally different to the
reference sequences. This could be inter sequence variations such as large insertions, deletions and inversions or inter sequence variations.
Jul'08
novoasm Using results from novoalign and novopair calls SNPs and short indels.
ACE format output is provided for viewing of alignments.
Aug '08
novodensity Read density analysis for copy number, expression level and, peak detection.
Aug '08"
?
Thanks,
Ryan
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