maf file in TCGA have redundancy on most genes (See below a example). Can anyone help me in this issue? This is not only in mutation annotation format files but also in RNA-seq to. I don't know what this mean.
Why the same gene is replicated by rows???
Ex:
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
Thanks a lot
Why the same gene is replicated by rows???
Ex:
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
A4GNT 51146 broad.mit.edu 37 3 137843364 137843364 + Silent SNP T C C TCGA-CJ-4882-01A-02D-1429-08 TCGA-CJ-4882-11A-01D-1429-08 Somatic Phase_I Capture Illumina GAIIx
Thanks a lot
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