HI.
I am suffering from a problem from retrieving the whole proteome dataset from NCBI for a while. Now I only have the taxonomic id of the organism (txid684364), and when I use the batch entrez of NCBI (http://www.ncbi.nlm.nih.gov/protein/...anism:noexp%5D), only part of the protein dataset was downloaded to the local computer. However, previously it worked well when I retrieved several other genome proteome.
Would anyone please give any solution to resolve this problem? I tried using efetch, however, I am confused of the command lines, Could anyone please teach me how to use the efetch by taking this organism(http://www.ncbi.nlm.nih.gov/protein/?txid684364) as examples to retrieve its whole genome proteins data?
Thanks!
I am suffering from a problem from retrieving the whole proteome dataset from NCBI for a while. Now I only have the taxonomic id of the organism (txid684364), and when I use the batch entrez of NCBI (http://www.ncbi.nlm.nih.gov/protein/...anism:noexp%5D), only part of the protein dataset was downloaded to the local computer. However, previously it worked well when I retrieved several other genome proteome.
Would anyone please give any solution to resolve this problem? I tried using efetch, however, I am confused of the command lines, Could anyone please teach me how to use the efetch by taking this organism(http://www.ncbi.nlm.nih.gov/protein/?txid684364) as examples to retrieve its whole genome proteins data?
Thanks!
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