Hi,
I've properly installed RepeatModeler and all the required libraries and external programs. It seems it can create the database, however in the second stage RepeatModeler is generating the error as shown below.
I've checked the fasta input file and the database created. Both are ok(as I checked 'blast' is working fine with the database)
1)
BuildDatabase -name sample -engine ncbi sample.fa
-------
Building database sample:
Adding sample.fasta to database
Number of sequences (bp) added to database: 28319 ( 247822612 bp )
--------
2)
RepeatModeler -database sample
----
.....
.....
Error: Unrecognized format specification: '%i'
Error: Unrecognized format specification: '%i'
Error: Unrecognized format specification: '%i'
RepeatModeler Version open-1.0.7
================================
Search Engine = ncbi
Database = sample
Database sample does not contain any sequences!
-----
Any help or suggestions?
I've properly installed RepeatModeler and all the required libraries and external programs. It seems it can create the database, however in the second stage RepeatModeler is generating the error as shown below.
I've checked the fasta input file and the database created. Both are ok(as I checked 'blast' is working fine with the database)
1)
BuildDatabase -name sample -engine ncbi sample.fa
-------
Building database sample:
Adding sample.fasta to database
Number of sequences (bp) added to database: 28319 ( 247822612 bp )
--------
2)
RepeatModeler -database sample
----
.....
.....
Error: Unrecognized format specification: '%i'
Error: Unrecognized format specification: '%i'
Error: Unrecognized format specification: '%i'
RepeatModeler Version open-1.0.7
================================
Search Engine = ncbi
Database = sample
Database sample does not contain any sequences!
-----
Any help or suggestions?
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