Hello all,
I know this must be a very simple and common task, sorry if I've overlooked an existing recommendation while searching the forum.
Given: BAM file with aligned paired-end reads
Needed: split it into 2 strand-specific BAM files (first read in each aligned pair should correspond to F strand of the reference in the first BAM file and to the R strand of the reference in the second BAM file).
Thanks a lot!
I know this must be a very simple and common task, sorry if I've overlooked an existing recommendation while searching the forum.
Given: BAM file with aligned paired-end reads
Needed: split it into 2 strand-specific BAM files (first read in each aligned pair should correspond to F strand of the reference in the first BAM file and to the R strand of the reference in the second BAM file).
Thanks a lot!
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