Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • vishal.rossi
    Member
    • Apr 2013
    • 25

    #1

    vim in Batchscript

    Hi,

    I want to use vim in Batchscript so that I can insert the text.
    Something like this.

    touch abc.txt
    vim abc.txt
    i ##problem here. You have to hit i on the keyboard to enter insert mode when working on the terminal. How to so this thing in batchscript####

    input_format=sam
    sv_type=all
    mates_orientation=RF
    read1_length=100
    read2_length=100
    mates_file=path
    cmap_file=path
    output_dir=path
    tmp_dir=path
    num_threads=4


    Esc :wq! ####same as previous comment in i. This command is to save and exit. Hie escape key on keyboard and the type :wq!

    Thanks in advance for the help and suggestions
  • biscuit13161
    Junior Member
    • Jul 2012
    • 3

    #2
    Is there a reason you need to use vim? otherwise, I think you'd be better using something like echo in your batch script:

    echo "input_format=sam\nsv_type=all\n..." > abc.txt

    I am presuming you're using bash, but I think most shells will function similarly.

    Comment

    • vishal.rossi
      Member
      • Apr 2013
      • 25

      #3
      Thanks a lot for the help.
      It works.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      22 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      19 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      42 views
      0 reactions
      Last Post SEQadmin2  
      Working...