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Hi,
I'm trying to understand "exonFrames" field in UCSC "refGene.txt".
I found that several entries are different from what I understand.
For example,
1306 NM_001130080 chr14 + 94577078 94583033 94578028 94582864 5 94577078,94577970,94581196,94582130,94582778, 94577143,94578119,94581226,94582279,94583033, 0 IFI27 cmpl cmpl -1,0,1,2,1,
According to the line above, exonFrames is "-1,0,1,2,1".
However, it should be "-1,0,1,1,0" when I calculated the value.
Is there anyone who can explain this difference?
Please let me know.
I'm trying to understand "exonFrames" field in UCSC "refGene.txt".
I found that several entries are different from what I understand.
For example,
1306 NM_001130080 chr14 + 94577078 94583033 94578028 94582864 5 94577078,94577970,94581196,94582130,94582778, 94577143,94578119,94581226,94582279,94583033, 0 IFI27 cmpl cmpl -1,0,1,2,1,
According to the line above, exonFrames is "-1,0,1,2,1".
However, it should be "-1,0,1,1,0" when I calculated the value.
Is there anyone who can explain this difference?
Please let me know.