AllPaths 2

[coldturkey]

hello all,

i'm looking for a good denovo assembler for solexa data. Currently I am attempting to get AllPaths2 running. I have compiled it and set up my data according to the manual. However when i run allpaths i get tje following error

Fatal error (pid=7368) at Wed Nov 25 17:18:44 2009:
I was hoping that /GFM4_data/ploidy was a regular file, but apparently it isn't. Perhaps it doesn't exist at all.

the ploidy file does infact exist and contains 1 number.
So Before I totally give up on AllPaths has anybody encountered this problem and if so have they resolved it.

regards

Brian

[Himalaya]

Allpaths2

Hi coldturkey
I am also trying to run allpaths and got the same problem that says ploidy file was a regular file and but apparently it isn't. Perhaps it doesn't exist at all.

Hope you have solved this problem. Please tell me how to solve this. Currently i am running different assembler and i find this allpaths is most difficult.