Hi everyone,
I have the same problem as below:
The read marked in red was aligned on different chromosomes. I have no idea what's happened to this case. Is it caused by the split algorithm?
Thanks.
I have the same problem as below:
Code:
SEA055486C:139:C06FAACXX:6:2207:3530:3130 83 chrVII 675196 60 59M42S = 675159 -96 TTGTTCGTGATGCTTCCGAAATTCCCGAAGGTTGCGTATTGCAATCTGTTAACCCAGAATCAGCCAGAACAAGAAGGACAAAGTGATCAAGACATAGGGAA C>59<DCCDCDDDDB?CCCCCAB9,.HHHJJJIGIJIJIIJIGGE@FGIGHDEGEHFHGEGCG<EHDHHIIJIIHEHDGHHHGGGIGGFHHHFFDDFDCC@ NM:i:1 AS:i:54 XS:i:0 XP:Z:chrXVI,-908080,52S49M,60,0; [COLOR="Red"]SEA055486C:139:C06FAACXX:6:2207:3530:3130 83 chrXVI 908080 60 52S49M chrVII 675159 0 TTGTTCGTGATGCTTCCGAAATTCCCGAAGGTTGCGTATTGCAATCTGTTAACCCAGAATCAGCCAGAACAAGAAGGACAAAGTGATCAAGACATAGGGAA C>59<DCCDCDDDDB?CCCCCAB9,.HHHJJJIGIJIJIIJIGGE@FGIGHDEGEHFHGEGCG<EHDHHIIJIIHEHDGHHHGGGIGGFHHHFFDDFDCC@ NM:i:0 AS:i:49 XS:i:0 XP:Z:chrVII,-675196,59M42S,60,1;[/COLOR] SEA055486C:139:C06FAACXX:6:2207:3530:3130 163 chrVII 675159 60 96M5S = 675196 96 ATTGTCTCGTTGATCAAGGCCATCGACGAAGTCACTGTTGTTCGTGATGCTTCCGAAATTCCAGAAGGTTGCGTATTGCAATCTGTTAACCCAGAATCAGC B@@DBDDFHBFHDGIGGIIGHGGDCGIGEHH?BGHICGGHIIGI?FEGGEFA@FGGGEHHHGHEDEFF>AE@BB?BDDDDDDDD@DDCE>CBBDBDA@CCD NM:i:0 AS:i:96 XS:i:0
Thanks.
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