I have been trying to install pindel 0.2.4t on my Mac OS X 7.5 and I get an error message.
bash-3.2$ less INSTALL
bash-3.2$ ./INSTALL /Users/davidkowbel/samtools-0.1.19/
path is now: /Users/davidkowbel/samtools-0.1.19/
make -C src pindel
parameter.cpp:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
parameter.cpp:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
c++ -Wall -g -c -O3 -fopenmp -I/Users/davidkowbel/samtools-0.1.19/ pindel.cpp -o pindel.o
clang: warning: argument unused during compilation: '-fopenmp'
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
make[1]: *** [pindel.o] Error 1
make: *** [pindel] Error 2
Creating pindel2vcf utility...
pindel2vcf created.
Creating sam2pindel utility...
sam2pindel created.
mv: rename src/pindel to ./pindel: No such file or directory
Pindel successfully compiled. The pindel executable can be found in this directory.
I have installed Xcode 4.6 . I don't know why the header file omp.h cannot be found?
bash-3.2$ less INSTALL
bash-3.2$ ./INSTALL /Users/davidkowbel/samtools-0.1.19/
path is now: /Users/davidkowbel/samtools-0.1.19/
make -C src pindel
parameter.cpp:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
parameter.cpp:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
c++ -Wall -g -c -O3 -fopenmp -I/Users/davidkowbel/samtools-0.1.19/ pindel.cpp -o pindel.o
clang: warning: argument unused during compilation: '-fopenmp'
pindel.cpp:28:10: fatal error: 'omp.h' file not found
#include <omp.h>
^
1 error generated.
make[1]: *** [pindel.o] Error 1
make: *** [pindel] Error 2
Creating pindel2vcf utility...
pindel2vcf created.
Creating sam2pindel utility...
sam2pindel created.
mv: rename src/pindel to ./pindel: No such file or directory
Pindel successfully compiled. The pindel executable can be found in this directory.
I have installed Xcode 4.6 . I don't know why the header file omp.h cannot be found?
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