Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Gene Expression data without Cel file

    Hi

    I was wondering is there any application that could be used to generate a .gct file without having the .cel file.

    Currently, I am using http://www.genomespace.org/ , it basically combines a bunch of great tools together for the user to use.

    This workflow: http://www.genomespace.org/support/g...ess-to-gitools

    Unfortunately, the data set that I am working with does not have a .cel nor the raw data available.

    The zip file does contained a few text files with tabbed gene expression. I was wondering if it was a way to use that to generate gene expression data that I could possibly use or even combine with the cufflinks expression that I have without using cummRbund as I am not too proficient with R just yet. Or if there a very dummy guide to use CummRbund with R and how to use everything

    Thank you everyone.

    Thank you,

    Zain

Latest Articles

Collapse

  • seqadmin
    Addressing Off-Target Effects in CRISPR Technologies
    by seqadmin






    The first FDA-approved CRISPR-based therapy marked the transition of therapeutic gene editing from a dream to reality1. CRISPR technologies have streamlined gene editing, and CRISPR screens have become an important approach for identifying genes involved in disease processes2. This technique introduces targeted mutations across numerous genes, enabling large-scale identification of gene functions, interactions, and pathways3. Identifying the full range...
    08-27-2024, 04:44 AM
  • seqadmin
    Selecting and Optimizing mRNA Library Preparations
    by seqadmin



    Sequencing mRNA provides a snapshot of cellular activity, allowing researchers to study the dynamics of cellular processes, compare gene expression across different tissue types, and gain insights into the mechanisms of complex diseases. “mRNA’s central role in the dogma of molecular biology makes it a logical and relevant focus for transcriptomic studies,” stated Sebastian Aguilar Pierlé, Ph.D., Application Development Lead at Inorevia. “One of the major hurdles for...
    08-07-2024, 12:11 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 08-27-2024, 04:40 AM
0 responses
16 views
0 likes
Last Post seqadmin  
Started by seqadmin, 08-22-2024, 05:00 AM
0 responses
293 views
0 likes
Last Post seqadmin  
Started by seqadmin, 08-21-2024, 10:49 AM
0 responses
135 views
0 likes
Last Post seqadmin  
Started by seqadmin, 08-19-2024, 05:12 AM
0 responses
124 views
0 likes
Last Post seqadmin  
Working...
X