I have completed some de novo assemblies of MiSeq generated 250PE reads with Minia and SSPACE. I've posted a description of the outcomes and some quality checks at the following site:
http://www.dartergenomics.org/tallapoosa-darter-genome
For those of you with experience in assemblies, could you please look this over and let me know if the scaffold distributions I ended up with are reasonable given the MiSeq data?
Thanks.
http://www.dartergenomics.org/tallapoosa-darter-genome
For those of you with experience in assemblies, could you please look this over and let me know if the scaffold distributions I ended up with are reasonable given the MiSeq data?
Thanks.
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