Hello all
I am looking for a visualisation tool to explore a large set of paired-end sequence data and be able to find the mate of a certain read. I have tried IGV (Integrative genomics viewer), but the problem with IGV that I couldn't find the mate of the read, it could display the reverse and forward reads in two different coolers, but it doesn't recognise the the forward mate of a reverse read or vice versa. Any suggestion to visualise the paired-end reads with a possibility to recognise the mate of any read ?
Many thanks
I am looking for a visualisation tool to explore a large set of paired-end sequence data and be able to find the mate of a certain read. I have tried IGV (Integrative genomics viewer), but the problem with IGV that I couldn't find the mate of the read, it could display the reverse and forward reads in two different coolers, but it doesn't recognise the the forward mate of a reverse read or vice versa. Any suggestion to visualise the paired-end reads with a possibility to recognise the mate of any read ?
Many thanks
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