Originally posted by cliff
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Originally posted by maubp
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Originally posted by maubp
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How is your scripting (e.g. Perl or Python)? What might be worth doing now is some basic validation like checking the read length distribution of both FASTQ files (before and after conversion). For Solexa/Illumina all the reads should be the same length. Also check that the two files have matching paired read names (before and after conversion).
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