Could somebody explain to me briefly how to use Pfam's hmm with hmmer.
For example, what are the steps for using the file from this site (raw hmm) with hmmalign?
hmmalign -o output thefile.hmm myseqs.fasta
Doesn't produce any errors. However, it's no alignment. All the sequences are still in the same exact order as they were in myseqs.fasta
For example, what are the steps for using the file from this site (raw hmm) with hmmalign?
hmmalign -o output thefile.hmm myseqs.fasta
Doesn't produce any errors. However, it's no alignment. All the sequences are still in the same exact order as they were in myseqs.fasta
Comment