Hi,
I desperately need help.
I have created my coverage file using GATK like the ExomeCNV user guide says.
However when I use read.coverage.gatk("filename") in R, it throws this error:
Error in data.frame(probe = gatk$Target, chr = chr, probe_start = start, :
arguments imply differing number of rows: 235036, 235019, 1
The number of rows is definitely the first argument (23506) and not the second (23509) and I can't figure out where it is losing these rows.
Program works fine using the sample data on the ExomeCNV wiki.
I am quite new to R so maybe this problem has an easy fix - I just can't seem to find it!
Please help.
Thanks.
I desperately need help.
I have created my coverage file using GATK like the ExomeCNV user guide says.
However when I use read.coverage.gatk("filename") in R, it throws this error:
Error in data.frame(probe = gatk$Target, chr = chr, probe_start = start, :
arguments imply differing number of rows: 235036, 235019, 1
The number of rows is definitely the first argument (23506) and not the second (23509) and I can't figure out where it is losing these rows.
Program works fine using the sample data on the ExomeCNV wiki.
I am quite new to R so maybe this problem has an easy fix - I just can't seem to find it!
Please help.
Thanks.
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